STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SOVF_188850PDZ domain-containing protein. (484 aa)    
Predicted Functional Partners:
SOVF_005250
PDZ domain-containing protein.
      
0.575
SOVF_094070
Protein kinase domain-containing protein.
     
 0.566
SOVF_199350
TPM_phosphatase domain-containing protein.
  
 
 0.531
SOVF_094190
26S proteasome non-ATPase regulatory subunit 2 homolog; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.
    
 0.503
SOVF_175080
Protein kinase domain-containing protein.
     
 0.490
SOVF_100260
Protein kinase domain-containing protein.
     
 0.490
SOVF_064580
Protein kinase domain-containing protein.
     
 0.490
SOVF_154600
VWFA domain-containing protein.
   
 0.482
SOVF_099120
PCI domain-containing protein.
   
 0.465
SOVF_135550
PCI domain-containing protein.
    
 0.464
Your Current Organism:
Spinacia oleracea
NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach
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