STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SOVF_186230Usp domain-containing protein. (99 aa)    
Predicted Functional Partners:
SOVF_134330
Uncharacterized protein.
    
 0.679
SOVF_124840
Uncharacterized protein.
    
 0.593
SOVF_142490
Uncharacterized protein.
   
 0.558
SOVF_142980
Uncharacterized protein.
    
 0.554
SOVF_124870
Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.
    
 0.541
SOVF_173820
Uncharacterized protein.
    
 0.468
SOVF_011210
TPR_REGION domain-containing protein.
    
 0.468
SOVF_161950
Uncharacterized protein.
    
 0.440
SOVF_177440
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
  0.426
SOVF_213570
DSHCT domain-containing protein.
    
 0.422
Your Current Organism:
Spinacia oleracea
NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach
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