STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SOVF_180130Uncharacterized protein. (106 aa)    
Predicted Functional Partners:
SOVF_011240
Ala_racemase_N domain-containing protein; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.
 
     0.927
SOVF_093100
Phos_pyr_kin domain-containing protein.
  
  
 0.681
SOVF_206240
Uncharacterized protein.
     
 0.583
SOVF_047980
NAD(P)H-hydrate epimerase; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX; Belongs to the NnrE/AIBP family.
     
 0.583
SOVF_174390
Uncharacterized protein.
  
  
 0.482
SOVF_173470
Uncharacterized protein.
  
  
 0.482
SOVF_122650
Uncharacterized protein.
  
  
 0.482
SOVF_079850
Uncharacterized protein.
  
  
 0.482
SOVF_161230
Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.
  
    0.422
rpl36
50S ribosomal protein L36, chloroplastic; Component of the chloroplast ribosome (chloro-ribosome), a dedicated translation machinery responsible for the synthesis of chloroplast genome-encoded proteins, including proteins of the transcription and translation machinery and components of the photosynthetic apparatus; Belongs to the bacterial ribosomal protein bL36 family.
  
    0.422
Your Current Organism:
Spinacia oleracea
NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach
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