STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SOVF_179910CBM20 domain-containing protein. (1204 aa)    
Predicted Functional Partners:
SOVF_070490
4-alpha-glucanotransferase.
   
  
 0.695
SOVF_003560
Uncharacterized protein.
   
  
 0.648
SOVF_128120
Aamy domain-containing protein.
   
  
 0.583
SOVF_138450
Alpha-amylase; Belongs to the glycosyl hydrolase 13 family.
      
 0.575
SOVF_113410
Alpha-amylase; Belongs to the glycosyl hydrolase 13 family.
      
 0.575
SOVF_169780
Aamy domain-containing protein.
   
  
 0.562
SOVF_008600
Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
   
  
 0.530
SOVF_000690
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
   0.523
SOVF_131330
Uncharacterized protein.
   
  
 0.510
SOVF_091760
HORMA domain-containing protein.
    
   0.510
Your Current Organism:
Spinacia oleracea
NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.