STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SOVF_177230RRM domain-containing protein. (146 aa)    
Predicted Functional Partners:
SOVF_036620
RRM domain-containing protein.
  
 
 0.660
SOVF_126270
RRM domain-containing protein.
  
 
 0.641
SOVF_100680
RRM domain-containing protein.
  
 
 0.560
SOVF_163080
RRM domain-containing protein.
  
 
 0.556
SOVF_023820
RRM domain-containing protein.
  
 
  0.528
PSRP2
30S ribosomal protein 2, chloroplastic; Component of the chloroplast ribosome (chloro-ribosome), a dedicated translation machinery responsible for the synthesis of chloroplast genome-encoded proteins, including proteins of the transcription and translation machinery and components of the photosynthetic apparatus. cS22 may have a role in the recruitment of stored chloroplast mRNAs for active protein synthesis.
  
     0.523
SOVF_113890
Uncharacterized protein.
  
     0.512
SOVF_083570
RRM domain-containing protein.
  
 
 0.487
SOVF_155100
Uncharacterized protein.
  
     0.486
SOVF_148440
RRM domain-containing protein.
  
     0.470
Your Current Organism:
Spinacia oleracea
NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach
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