STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SOVF_170370Uncharacterized protein; Belongs to the FPP/GGPP synthase family. (429 aa)    
Predicted Functional Partners:
SOVF_022480
Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprene-containing compounds such as sterols and terpenoids. Belongs to the diphosphomevalonate decarboxylase family.
  
 0.968
SOVF_112510
Nudix hydrolase domain-containing protein.
  
 
 0.960
SOVF_128270
Uncharacterized protein; Belongs to the FPP/GGPP synthase family.
    
 0.942
SOVF_090530
Uncharacterized protein; Belongs to the FPP/GGPP synthase family.
    
 0.942
SOVF_142790
Uncharacterized protein.
    
 0.928
SOVF_125890
Uncharacterized protein; Belongs to the FPP/GGPP synthase family.
  
  
 
0.909
SOVF_205430
AA_kinase domain-containing protein.
     
 0.905
SOVF_154800
Uncharacterized protein; Belongs to the FPP/GGPP synthase family.
     
0.902
SOVF_065190
Uncharacterized protein.
  
  
 
0.901
SOVF_111600
Terpene_synth_C domain-containing protein.
     
  0.900
Your Current Organism:
Spinacia oleracea
NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach
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