STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SOVF_165990RNA_pol_L_2 domain-containing protein. (116 aa)    
Predicted Functional Partners:
SOVF_026860
Uncharacterized protein.
   
 0.998
SOVF_138370
Uncharacterized protein.
   
 0.997
SOVF_042120
RPOLD domain-containing protein.
   
 0.997
SOVF_100230
RPOL4c domain-containing protein.
   
 0.996
SOVF_067330
TFIIS-type domain-containing protein.
   
 0.995
SOVF_067320
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
   
 0.995
SOVF_071840
Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.
   
 0.990
SOVF_196250
Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.
   
 0.988
SOVF_032000
Uncharacterized protein.
   
 0.988
SOVF_069460
Uncharacterized protein.
   
 0.986
Your Current Organism:
Spinacia oleracea
NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach
Server load: low (30%) [HD]