SOVF_161590 protein (Spinacia oleracea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SOVF_161590

ADF-H domain-containing protein; Belongs to the actin-binding proteins ADF family. (143 aa)

Predicted Functional Partners:

SOVF_121010

0.798

SOVF_198000

0.796

SOVF_166810

0.792

SOVF_202400

0.748

SOVF_013400

0.674

SOVF_176390

0.605

SOVF_212020

0.581

SOVF_091880

0.581

SOVF_007930

0.581

SOVF_012910

0.581

Your Current Organism:

Spinacia oleracea

NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SOVF_007930	SOVF_013400	A0A0K9S0K2	A0A0K9RYV4	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.711
SOVF_007930	SOVF_121010	A0A0K9S0K2	A0A0K9R0D8	Uncharacterized protein.	Adenylyl cyclase-associated protein; Belongs to the CAP family.	0.603
SOVF_007930	SOVF_161590	A0A0K9S0K2	A0A0K9QPT4	Uncharacterized protein.	ADF-H domain-containing protein; Belongs to the actin-binding proteins ADF family.	0.581
SOVF_007930	SOVF_166810	A0A0K9S0K2	A0A0K9QL47	Uncharacterized protein.	Profilin; Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations.	0.586
SOVF_007930	SOVF_176390	A0A0K9S0K2	A0A0K9QI68	Uncharacterized protein.	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	0.753
SOVF_007930	SOVF_198000	A0A0K9S0K2	A0A0K9QD73	Uncharacterized protein.	Profilin; Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations.	0.586
SOVF_007930	SOVF_202400	A0A0K9S0K2	A0A0K9QCA4	Uncharacterized protein.	Profilin; Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations.	0.573
SOVF_012910	SOVF_013400	A0A0K9S0Q0	A0A0K9RYV4	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.711
SOVF_012910	SOVF_121010	A0A0K9S0Q0	A0A0K9R0D8	Uncharacterized protein.	Adenylyl cyclase-associated protein; Belongs to the CAP family.	0.603
SOVF_012910	SOVF_161590	A0A0K9S0Q0	A0A0K9QPT4	Uncharacterized protein.	ADF-H domain-containing protein; Belongs to the actin-binding proteins ADF family.	0.581
SOVF_012910	SOVF_166810	A0A0K9S0Q0	A0A0K9QL47	Uncharacterized protein.	Profilin; Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations.	0.586
SOVF_012910	SOVF_176390	A0A0K9S0Q0	A0A0K9QI68	Uncharacterized protein.	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	0.753
SOVF_012910	SOVF_198000	A0A0K9S0Q0	A0A0K9QD73	Uncharacterized protein.	Profilin; Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations.	0.586
SOVF_012910	SOVF_202400	A0A0K9S0Q0	A0A0K9QCA4	Uncharacterized protein.	Profilin; Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations.	0.573
SOVF_013400	SOVF_007930	A0A0K9RYV4	A0A0K9S0K2	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.711
SOVF_013400	SOVF_012910	A0A0K9RYV4	A0A0K9S0Q0	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.711
SOVF_013400	SOVF_091880	A0A0K9RYV4	A0A0K9RBK7	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.711
SOVF_013400	SOVF_121010	A0A0K9RYV4	A0A0K9R0D8	WD_REPEATS_REGION domain-containing protein.	Adenylyl cyclase-associated protein; Belongs to the CAP family.	0.839
SOVF_013400	SOVF_161590	A0A0K9RYV4	A0A0K9QPT4	WD_REPEATS_REGION domain-containing protein.	ADF-H domain-containing protein; Belongs to the actin-binding proteins ADF family.	0.674
SOVF_013400	SOVF_166810	A0A0K9RYV4	A0A0K9QL47	WD_REPEATS_REGION domain-containing protein.	Profilin; Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations.	0.447