SOVF_148420 protein (Spinacia oleracea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SOVF_148420

XS domain-containing protein. (973 aa)

Predicted Functional Partners:

SOVF_126340

0.844

SOVF_067630

0.844

SOVF_122450

0.827

SOVF_051080

0.827

SOVF_091760

0.722

SOVF_010980

0.701

SOVF_154680

0.698

SOVF_077770

0.696

SOVF_119600

0.694

SOVF_117580

0.684

Your Current Organism:

Spinacia oleracea

NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SOVF_010980	SOVF_148420	A0A0K9RZM1	A0A0K9QRM0	Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family.	XS domain-containing protein.	0.701
SOVF_010980	SOVF_154680	A0A0K9RZM1	A0A0K9QPZ5	Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family.	Uncharacterized protein.	0.996
SOVF_051080	SOVF_067630	A0A0K9RM25	A0A0K9RIK7	Uncharacterized protein.	USP domain-containing protein; Belongs to the peptidase C19 family.	0.934
SOVF_051080	SOVF_126340	A0A0K9RM25	A0A0K9QYR6	Uncharacterized protein.	USP domain-containing protein; Belongs to the peptidase C19 family.	0.934
SOVF_051080	SOVF_148420	A0A0K9RM25	A0A0K9QRM0	Uncharacterized protein.	XS domain-containing protein.	0.827
SOVF_067630	SOVF_051080	A0A0K9RIK7	A0A0K9RM25	USP domain-containing protein; Belongs to the peptidase C19 family.	Uncharacterized protein.	0.934
SOVF_067630	SOVF_122450	A0A0K9RIK7	A0A0K9QZY1	USP domain-containing protein; Belongs to the peptidase C19 family.	WD_REPEATS_REGION domain-containing protein.	0.934
SOVF_067630	SOVF_148420	A0A0K9RIK7	A0A0K9QRM0	USP domain-containing protein; Belongs to the peptidase C19 family.	XS domain-containing protein.	0.844
SOVF_077770	SOVF_091760	A0A0K9RFD2	A0A0K9R9I4	TPR_REGION domain-containing protein.	HORMA domain-containing protein.	0.989
SOVF_077770	SOVF_117580	A0A0K9RFD2	A0A0K9R1H5	TPR_REGION domain-containing protein.	ANAPC4 domain-containing protein.	0.996
SOVF_077770	SOVF_148420	A0A0K9RFD2	A0A0K9QRM0	TPR_REGION domain-containing protein.	XS domain-containing protein.	0.696
SOVF_091760	SOVF_077770	A0A0K9R9I4	A0A0K9RFD2	HORMA domain-containing protein.	TPR_REGION domain-containing protein.	0.989
SOVF_091760	SOVF_117580	A0A0K9R9I4	A0A0K9R1H5	HORMA domain-containing protein.	ANAPC4 domain-containing protein.	0.986
SOVF_091760	SOVF_148420	A0A0K9R9I4	A0A0K9QRM0	HORMA domain-containing protein.	XS domain-containing protein.	0.722
SOVF_117580	SOVF_077770	A0A0K9R1H5	A0A0K9RFD2	ANAPC4 domain-containing protein.	TPR_REGION domain-containing protein.	0.996
SOVF_117580	SOVF_091760	A0A0K9R1H5	A0A0K9R9I4	ANAPC4 domain-containing protein.	HORMA domain-containing protein.	0.986
SOVF_117580	SOVF_148420	A0A0K9R1H5	A0A0K9QRM0	ANAPC4 domain-containing protein.	XS domain-containing protein.	0.684
SOVF_119600	SOVF_148420	A0A0K9R0T6	A0A0K9QRM0	Ipi1_N domain-containing protein.	XS domain-containing protein.	0.694
SOVF_122450	SOVF_067630	A0A0K9QZY1	A0A0K9RIK7	WD_REPEATS_REGION domain-containing protein.	USP domain-containing protein; Belongs to the peptidase C19 family.	0.934
SOVF_122450	SOVF_126340	A0A0K9QZY1	A0A0K9QYR6	WD_REPEATS_REGION domain-containing protein.	USP domain-containing protein; Belongs to the peptidase C19 family.	0.934