SOVF_144710 protein (Spinacia oleracea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SOVF_144710

RF_PROK_I domain-containing protein. (287 aa)

Predicted Functional Partners:

SOVF_158880

0.798

SOVF_150900

0.798

SOVF_115990

0.771

SOVF_022080

0.760

SOVF_009030

0.760

RPL31

0.748

SOVF_054150

0.728

SOVF_140750

0.704

SOVF_063160

0.704

SOVF_197200

0.674

Your Current Organism:

Spinacia oleracea

NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RPL31	SOVF_009030	P82249	A0A0K9S0A5	50S ribosomal protein L31, chloroplastic; Component of the chloroplast ribosome (chloro-ribosome), a dedicated translation machinery responsible for the synthesis of chloroplast genome-encoded proteins, including proteins of the transcription and translation machinery and components of the photosynthetic apparatus; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.	RRF domain-containing protein.	0.912
RPL31	SOVF_022080	P82249	A0A0K9RXD4	50S ribosomal protein L31, chloroplastic; Component of the chloroplast ribosome (chloro-ribosome), a dedicated translation machinery responsible for the synthesis of chloroplast genome-encoded proteins, including proteins of the transcription and translation machinery and components of the photosynthetic apparatus; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.	RRF domain-containing protein.	0.981
RPL31	SOVF_115990	P82249	A0A0K9R1D4	50S ribosomal protein L31, chloroplastic; Component of the chloroplast ribosome (chloro-ribosome), a dedicated translation machinery responsible for the synthesis of chloroplast genome-encoded proteins, including proteins of the transcription and translation machinery and components of the photosynthetic apparatus; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.	Uncharacterized protein.	0.997
RPL31	SOVF_144710	P82249	A0A0K9QT25	50S ribosomal protein L31, chloroplastic; Component of the chloroplast ribosome (chloro-ribosome), a dedicated translation machinery responsible for the synthesis of chloroplast genome-encoded proteins, including proteins of the transcription and translation machinery and components of the photosynthetic apparatus; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.	RF_PROK_I domain-containing protein.	0.748
RPL31	SOVF_150900	P82249	A0A0K9QSS4	50S ribosomal protein L31, chloroplastic; Component of the chloroplast ribosome (chloro-ribosome), a dedicated translation machinery responsible for the synthesis of chloroplast genome-encoded proteins, including proteins of the transcription and translation machinery and components of the photosynthetic apparatus; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.	MTS domain-containing protein.	0.449
RPL31	SOVF_158880	P82249	A0A0K9QNM0	50S ribosomal protein L31, chloroplastic; Component of the chloroplast ribosome (chloro-ribosome), a dedicated translation machinery responsible for the synthesis of chloroplast genome-encoded proteins, including proteins of the transcription and translation machinery and components of the photosynthetic apparatus; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.	Uncharacterized protein.	0.449
RPL31	SOVF_197200	P82249	A0A0K9QDF1	50S ribosomal protein L31, chloroplastic; Component of the chloroplast ribosome (chloro-ribosome), a dedicated translation machinery responsible for the synthesis of chloroplast genome-encoded proteins, including proteins of the transcription and translation machinery and components of the photosynthetic apparatus; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.	RF_PROK_I domain-containing protein.	0.511
SOVF_009030	RPL31	A0A0K9S0A5	P82249	RRF domain-containing protein.	50S ribosomal protein L31, chloroplastic; Component of the chloroplast ribosome (chloro-ribosome), a dedicated translation machinery responsible for the synthesis of chloroplast genome-encoded proteins, including proteins of the transcription and translation machinery and components of the photosynthetic apparatus; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.	0.912
SOVF_009030	SOVF_063160	A0A0K9S0A5	A0A0K9RK17	RRF domain-containing protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.447
SOVF_009030	SOVF_115990	A0A0K9S0A5	A0A0K9R1D4	RRF domain-containing protein.	Uncharacterized protein.	0.859
SOVF_009030	SOVF_140750	A0A0K9S0A5	A0A0K9QU94	RRF domain-containing protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.447
SOVF_009030	SOVF_144710	A0A0K9S0A5	A0A0K9QT25	RRF domain-containing protein.	RF_PROK_I domain-containing protein.	0.760
SOVF_009030	SOVF_197200	A0A0K9S0A5	A0A0K9QDF1	RRF domain-containing protein.	RF_PROK_I domain-containing protein.	0.928
SOVF_022080	RPL31	A0A0K9RXD4	P82249	RRF domain-containing protein.	50S ribosomal protein L31, chloroplastic; Component of the chloroplast ribosome (chloro-ribosome), a dedicated translation machinery responsible for the synthesis of chloroplast genome-encoded proteins, including proteins of the transcription and translation machinery and components of the photosynthetic apparatus; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.	0.981
SOVF_022080	SOVF_063160	A0A0K9RXD4	A0A0K9RK17	RRF domain-containing protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.447
SOVF_022080	SOVF_115990	A0A0K9RXD4	A0A0K9R1D4	RRF domain-containing protein.	Uncharacterized protein.	0.859
SOVF_022080	SOVF_140750	A0A0K9RXD4	A0A0K9QU94	RRF domain-containing protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.447
SOVF_022080	SOVF_144710	A0A0K9RXD4	A0A0K9QT25	RRF domain-containing protein.	RF_PROK_I domain-containing protein.	0.760
SOVF_022080	SOVF_197200	A0A0K9RXD4	A0A0K9QDF1	RRF domain-containing protein.	RF_PROK_I domain-containing protein.	0.928
SOVF_054150	SOVF_144710	A0A0K9RMV8	A0A0K9QT25	Thymidine kinase.	RF_PROK_I domain-containing protein.	0.728