STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SOVF_139550GatB_Yqey domain-containing protein. (218 aa)    
Predicted Functional Partners:
SOVF_172140
GatB_N domain-containing protein.
 
  
  0.976
GATA
Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).
 0.945
SOVF_044290
AA_TRNA_LIGASE_II domain-containing protein.
  
 0.942
SOVF_146330
TPR_REGION domain-containing protein.
 
 0.860
SOVF_153470
Amidase domain-containing protein.
 0.859
SOVF_158690
Amidase domain-containing protein.
 0.856
SOVF_094080
TPR_REGION domain-containing protein.
 
 0.856
SOVF_032850
Uncharacterized protein.
 
 0.839
SOVF_035660
Amidase domain-containing protein.
 
 0.837
SOVF_094360
Uncharacterized protein.
  
 
 0.835
Your Current Organism:
Spinacia oleracea
NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.