STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SOVF_127790PCRF domain-containing protein. (421 aa)    
Predicted Functional Partners:
SOVF_158880
Uncharacterized protein.
  
 
 0.798
SOVF_150900
MTS domain-containing protein.
  
 
 0.798
SOVF_115990
Uncharacterized protein.
   
 
 0.771
RPL31
50S ribosomal protein L31, chloroplastic; Component of the chloroplast ribosome (chloro-ribosome), a dedicated translation machinery responsible for the synthesis of chloroplast genome-encoded proteins, including proteins of the transcription and translation machinery and components of the photosynthetic apparatus; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.
  
 
 0.748
SOVF_054150
Thymidine kinase.
  
  
 0.728
SOVF_197200
RF_PROK_I domain-containing protein.
   
 
 0.674
SOVF_150840
Uncharacterized protein.
  
 
 0.661
RPL27
50S ribosomal protein L27, chloroplastic; Component of the chloroplast ribosome (chloro-ribosome), a dedicated translation machinery responsible for the synthesis of chloroplast genome-encoded proteins, including proteins of the transcription and translation machinery and components of the photosynthetic apparatus; Belongs to the bacterial ribosomal protein bL27 family.
  
 
 0.661
SOVF_010860
Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.
  
 
 0.656
PRPS9
30S ribosomal protein S9, chloroplastic; Component of the chloroplast ribosome (chloro-ribosome), a dedicated translation machinery responsible for the synthesis of chloroplast genome-encoded proteins, including proteins of the transcription and translation machinery and components of the photosynthetic apparatus; Belongs to the universal ribosomal protein uS9 family.
  
 
 0.656
Your Current Organism:
Spinacia oleracea
NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach
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