SOVF_120720 protein (Spinacia oleracea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SOVF_120720

Uncharacterized protein. (557 aa)

Predicted Functional Partners:

SOVF_169650

0.990

SOVF_209850

0.949

SOVF_207280

0.943

SOVF_136520

0.943

SOVF_192460

0.908

SOVF_174370

0.884

SOVF_178760

0.884

SOVF_210790

0.721

SOVF_209760

0.721

SOVF_155460

0.721

Your Current Organism:

Spinacia oleracea

NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SOVF_120720	SOVF_136520	A0A0K9R0G9	A0A0K9QVL5	Uncharacterized protein.	Uncharacterized protein.	0.943
SOVF_120720	SOVF_155460	A0A0K9R0G9	A0A0K9QPP8	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein.	0.721
SOVF_120720	SOVF_169650	A0A0K9R0G9	A0A0K9QKB2	Uncharacterized protein.	Xylose isomerase.	0.990
SOVF_120720	SOVF_174370	A0A0K9R0G9	A0A0K9QIU0	Uncharacterized protein.	Glycerol-3-phosphate dehydrogenase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.	0.884
SOVF_120720	SOVF_178760	A0A0K9R0G9	A0A0K9QJ24	Uncharacterized protein.	DAO domain-containing protein.	0.884
SOVF_120720	SOVF_192460	A0A0K9R0G9	A0A0K9QD67	Uncharacterized protein.	Xylose isomerase.	0.908
SOVF_120720	SOVF_207280	A0A0K9R0G9	A0A0K9Q8N9	Uncharacterized protein.	Uncharacterized protein.	0.943
SOVF_120720	SOVF_209760	A0A0K9R0G9	A0A0K9Q7Y4	Uncharacterized protein.	PKS_ER domain-containing protein.	0.721
SOVF_120720	SOVF_209850	A0A0K9R0G9	A0A0K9QA11	Uncharacterized protein.	Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1; In the N-terminal section; belongs to the aldolase class II family. MtnB subfamily.	0.949
SOVF_120720	SOVF_210790	A0A0K9R0G9	A0A0K9Q7P1	Uncharacterized protein.	Uncharacterized protein.	0.721
SOVF_136520	SOVF_120720	A0A0K9QVL5	A0A0K9R0G9	Uncharacterized protein.	Uncharacterized protein.	0.943
SOVF_136520	SOVF_207280	A0A0K9QVL5	A0A0K9Q8N9	Uncharacterized protein.	Uncharacterized protein.	0.907
SOVF_155460	SOVF_120720	A0A0K9QPP8	A0A0K9R0G9	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.721
SOVF_169650	SOVF_120720	A0A0K9QKB2	A0A0K9R0G9	Xylose isomerase.	Uncharacterized protein.	0.990
SOVF_169650	SOVF_209760	A0A0K9QKB2	A0A0K9Q7Y4	Xylose isomerase.	PKS_ER domain-containing protein.	0.918
SOVF_169650	SOVF_209850	A0A0K9QKB2	A0A0K9QA11	Xylose isomerase.	Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1; In the N-terminal section; belongs to the aldolase class II family. MtnB subfamily.	0.550
SOVF_169650	SOVF_210790	A0A0K9QKB2	A0A0K9Q7P1	Xylose isomerase.	Uncharacterized protein.	0.918
SOVF_174370	SOVF_120720	A0A0K9QIU0	A0A0K9R0G9	Glycerol-3-phosphate dehydrogenase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.	Uncharacterized protein.	0.884
SOVF_178760	SOVF_120720	A0A0K9QJ24	A0A0K9R0G9	DAO domain-containing protein.	Uncharacterized protein.	0.884
SOVF_192460	SOVF_120720	A0A0K9QD67	A0A0K9R0G9	Xylose isomerase.	Uncharacterized protein.	0.908