STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SOVF_120250IGR domain-containing protein. (113 aa)    
Predicted Functional Partners:
SOVF_157060
Uncharacterized protein.
      
 0.570
SOVF_115990
Uncharacterized protein.
   
   0.535
SOVF_100280
Uncharacterized protein.
   
   0.530
SOVF_178180
Uncharacterized protein.
   
   0.519
SOVF_202280
Ribosomal_L6 domain-containing protein; Belongs to the universal ribosomal protein uL6 family.
   
   0.516
SOVF_180990
L51_S25_CI-B8 domain-containing protein.
   
   0.516
SOVF_168970
Uncharacterized protein.
   
   0.516
SOVF_066860
Uncharacterized protein.
   
   0.516
SOVF_185930
Uncharacterized protein.
   
   0.515
SOVF_150170
Uncharacterized protein.
   
   0.515
Your Current Organism:
Spinacia oleracea
NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.