SOVF_113290 protein (Spinacia oleracea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SOVF_113290

Uncharacterized protein; Belongs to the peptidase C1 family. (363 aa)

Predicted Functional Partners:

SOVF_133090

0.809

THI1

0.605

SOVF_050110

0.428

SOVF_118900

0.426

SOVF_124620

0.410

SOVF_123500

0.410

SOVF_091040

0.402

Your Current Organism:

Spinacia oleracea

NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SOVF_050110	SOVF_113290	A0A0K9RMF4	A0A0K9R2T3	Uncharacterized protein.	Uncharacterized protein; Belongs to the peptidase C1 family.	0.428
SOVF_091040	SOVF_113290	A0A0K9RBS5	A0A0K9R2T3	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein; Belongs to the peptidase C1 family.	0.402
SOVF_113290	SOVF_050110	A0A0K9R2T3	A0A0K9RMF4	Uncharacterized protein; Belongs to the peptidase C1 family.	Uncharacterized protein.	0.428
SOVF_113290	SOVF_091040	A0A0K9R2T3	A0A0K9RBS5	Uncharacterized protein; Belongs to the peptidase C1 family.	WD_REPEATS_REGION domain-containing protein.	0.402
SOVF_113290	SOVF_118900	A0A0K9R2T3	A0A0K9R103	Uncharacterized protein; Belongs to the peptidase C1 family.	Glyco_hydro_19_cat domain-containing protein.	0.426
SOVF_113290	SOVF_123500	A0A0K9R2T3	A0A0K9QZL7	Uncharacterized protein; Belongs to the peptidase C1 family.	Uncharacterized protein.	0.410
SOVF_113290	SOVF_124620	A0A0K9R2T3	A0A0K9QZ96	Uncharacterized protein; Belongs to the peptidase C1 family.	Uncharacterized protein.	0.410
SOVF_113290	SOVF_133090	A0A0K9R2T3	A0A0K9QWN6	Uncharacterized protein; Belongs to the peptidase C1 family.	Uncharacterized protein.	0.809
SOVF_113290	THI1	A0A0K9R2T3	A0A0K9Q9I3	Uncharacterized protein; Belongs to the peptidase C1 family.	Thiamine thiazole synthase, chloroplastic; Involved in biosynthesis of the thiamine precursor thiazole. Catalyzes the conversion of NAD and glycine to adenosine diphosphate 5- (2-hydroxyethyl)-4-methylthiazole-2-carboxylic acid (ADT), an adenylated thiazole intermediate. The reaction includes an iron- dependent sulfide transfer from a conserved cysteine residue of the protein to a thiazole intermediate. The enzyme can only undergo a single turnover, which suggests it is a suicide enzyme. May have additional roles in adaptation to various stress conditions and in DNA damage tolerance; B [...]	0.605
SOVF_118900	SOVF_113290	A0A0K9R103	A0A0K9R2T3	Glyco_hydro_19_cat domain-containing protein.	Uncharacterized protein; Belongs to the peptidase C1 family.	0.426
SOVF_123500	SOVF_113290	A0A0K9QZL7	A0A0K9R2T3	Uncharacterized protein.	Uncharacterized protein; Belongs to the peptidase C1 family.	0.410
SOVF_124620	SOVF_113290	A0A0K9QZ96	A0A0K9R2T3	Uncharacterized protein.	Uncharacterized protein; Belongs to the peptidase C1 family.	0.410
SOVF_133090	SOVF_113290	A0A0K9QWN6	A0A0K9R2T3	Uncharacterized protein.	Uncharacterized protein; Belongs to the peptidase C1 family.	0.809
THI1	SOVF_113290	A0A0K9Q9I3	A0A0K9R2T3	Thiamine thiazole synthase, chloroplastic; Involved in biosynthesis of the thiamine precursor thiazole. Catalyzes the conversion of NAD and glycine to adenosine diphosphate 5- (2-hydroxyethyl)-4-methylthiazole-2-carboxylic acid (ADT), an adenylated thiazole intermediate. The reaction includes an iron- dependent sulfide transfer from a conserved cysteine residue of the protein to a thiazole intermediate. The enzyme can only undergo a single turnover, which suggests it is a suicide enzyme. May have additional roles in adaptation to various stress conditions and in DNA damage tolerance; B [...]	Uncharacterized protein; Belongs to the peptidase C1 family.	0.605