STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SOVF_118830UBA domain-containing protein. (405 aa)    
Predicted Functional Partners:
SOVF_139000
Rhomboid domain-containing protein.
      
 0.570
SOVF_187530
Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.
   
 
 0.548
SOVF_007050
Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.
   
 
 0.548
SOVF_116300
BFN domain-containing protein.
     
  0.540
SOVF_088230
Autophagy-related protein 3.
     
  0.540
SOVF_063950
BFN domain-containing protein.
     
  0.540
SOVF_020250
BFN domain-containing protein.
     
  0.540
SOVF_071200
Uncharacterized protein.
   
  
 0.438
SOVF_101070
Uncharacterized protein.
   
  
 0.429
SOVF_161670
Rhomboid domain-containing protein.
      
 0.426
Your Current Organism:
Spinacia oleracea
NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach
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