STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SOVF_109830Glycos_transf_1 domain-containing protein. (723 aa)    
Predicted Functional Partners:
SOVF_185050
ERCC4 domain-containing protein.
    
 0.575
SOVF_097700
ERCC4 domain-containing protein.
    
 0.575
SOVF_079680
Uncharacterized protein; Belongs to the phosphohexose mutase family.
   
 0.561
SOVF_014010
Uncharacterized protein.
   
 0.561
SOVF_011980
Uncharacterized protein.
  
 
 0.553
SOVF_054170
Phosphomannomutase; Involved in the synthesis of the GDP-mannose and dolichol- phosphate-mannose required for a number of critical mannosyl transfer reactions.
    
 0.547
SOVF_005320
Uncharacterized protein.
    
 0.546
SOVF_012860
Uncharacterized protein.
  
 
 0.541
SOVF_109370
Uncharacterized protein; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.
    
 0.530
SOVF_069880
Glyco_trans_2-like domain-containing protein.
  
 
 0.529
Your Current Organism:
Spinacia oleracea
NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach
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