SOVF_107740 protein (Spinacia oleracea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SOVF_107740

Uncharacterized protein. (328 aa)

Predicted Functional Partners:

SOVF_022210

0.833

SOVF_108300

0.807

SOVF_071360

0.791

SOVF_105610

0.769

SOVF_145130

0.742

SOVF_178500

0.724

SOVF_026160

0.721

SOVF_106790

0.705

SOVF_182980

0.688

SOVF_106920

0.675

Your Current Organism:

Spinacia oleracea

NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SOVF_022210	SOVF_026160	A0A0K9RY38	A0A0K9RWS1	tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.	Uncharacterized protein.	0.864
SOVF_022210	SOVF_105610	A0A0K9RY38	A0A0K9R576	tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.	Uncharacterized protein.	0.750
SOVF_022210	SOVF_106920	A0A0K9RY38	A0A0K9R6E2	tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.	WD_REPEATS_REGION domain-containing protein.	0.763
SOVF_022210	SOVF_107740	A0A0K9RY38	A0A0K9R4G9	tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.	Uncharacterized protein.	0.833
SOVF_022210	SOVF_145130	A0A0K9RY38	A0A0K9QSX9	tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.	tRNA (adenine(58)-N(1))-methyltransferase.	0.944
SOVF_022210	SOVF_182980	A0A0K9RY38	A0A0K9QHR8	tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.	Uncharacterized protein.	0.735
SOVF_026160	SOVF_022210	A0A0K9RWS1	A0A0K9RY38	Uncharacterized protein.	tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.	0.864
SOVF_026160	SOVF_071360	A0A0K9RWS1	A0A0K9RHC5	Uncharacterized protein.	Uncharacterized protein.	0.931
SOVF_026160	SOVF_105610	A0A0K9RWS1	A0A0K9R576	Uncharacterized protein.	Uncharacterized protein.	0.860
SOVF_026160	SOVF_106790	A0A0K9RWS1	A0A0K9R4K3	Uncharacterized protein.	Protein MAK16 homolog; Belongs to the MAK16 family.	0.611
SOVF_026160	SOVF_106920	A0A0K9RWS1	A0A0K9R6E2	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.999
SOVF_026160	SOVF_107740	A0A0K9RWS1	A0A0K9R4G9	Uncharacterized protein.	Uncharacterized protein.	0.721
SOVF_026160	SOVF_108300	A0A0K9RWS1	A0A0K9R6A1	Uncharacterized protein.	Brix domain-containing protein.	0.939
SOVF_026160	SOVF_145130	A0A0K9RWS1	A0A0K9QSX9	Uncharacterized protein.	tRNA (adenine(58)-N(1))-methyltransferase.	0.942
SOVF_026160	SOVF_178500	A0A0K9RWS1	A0A0K9QHK7	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.889
SOVF_026160	SOVF_182980	A0A0K9RWS1	A0A0K9QHR8	Uncharacterized protein.	Uncharacterized protein.	0.998
SOVF_071360	SOVF_026160	A0A0K9RHC5	A0A0K9RWS1	Uncharacterized protein.	Uncharacterized protein.	0.931
SOVF_071360	SOVF_105610	A0A0K9RHC5	A0A0K9R576	Uncharacterized protein.	Uncharacterized protein.	0.880
SOVF_071360	SOVF_106790	A0A0K9RHC5	A0A0K9R4K3	Uncharacterized protein.	Protein MAK16 homolog; Belongs to the MAK16 family.	0.857
SOVF_071360	SOVF_106920	A0A0K9RHC5	A0A0K9R6E2	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.786