STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SOVF_113940Uncharacterized protein. (1035 aa)    
Predicted Functional Partners:
SOVF_166050
Uncharacterized protein.
   
 0.993
SOVF_007240
Cleavage and polyadenylation specificity factor subunit 2.
   
 0.987
SOVF_018120
Protein CLP1 homolog; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation; Belongs to the Clp1 family. Clp1 subfamily.
    
 0.983
SOVF_062990
CID domain-containing protein.
  
 
0.978
SOVF_164520
TPR_REGION domain-containing protein.
    
 0.974
SOVF_132750
Uncharacterized protein.
    
 0.965
SOVF_054590
Uncharacterized protein.
   
 0.961
SOVF_023580
Uncharacterized protein.
    
 0.952
SOVF_025820
Uncharacterized protein.
    
 0.952
SOVF_163080
RRM domain-containing protein.
    
 0.942
Your Current Organism:
Spinacia oleracea
NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.