SOVF_103590 protein (Spinacia oleracea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SOVF_103590

Alpha-L-AF_C domain-containing protein. (670 aa)

Predicted Functional Partners:

SOVF_102460

0.902

SOVF_006930

0.902

SOVF_183160

0.806

SOVF_168180

0.806

SOVF_124140

0.806

SOVF_103570

0.806

SOVF_068320

0.806

SOVF_143210

0.800

SOVF_044510

0.800

SOVF_010000

0.800

Your Current Organism:

Spinacia oleracea

NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SOVF_006930	SOVF_010000	A0A0K9S0X1	A0A0K9S1H6	Alpha-L-AF_C domain-containing protein.	Aldo_ket_red domain-containing protein.	0.800
SOVF_006930	SOVF_044510	A0A0K9S0X1	A0A0K9RR32	Alpha-L-AF_C domain-containing protein.	Uncharacterized protein.	0.800
SOVF_006930	SOVF_068320	A0A0K9S0X1	A0A0K9RIF6	Alpha-L-AF_C domain-containing protein.	Uncharacterized protein.	0.800
SOVF_006930	SOVF_102460	A0A0K9S0X1	A0A0K9R823	Alpha-L-AF_C domain-containing protein.	Alpha-L-AF_C domain-containing protein.	0.901
SOVF_006930	SOVF_103570	A0A0K9S0X1	A0A0K9R5Q6	Alpha-L-AF_C domain-containing protein.	GHMP_kinases_N domain-containing protein.	0.806
SOVF_006930	SOVF_103590	A0A0K9S0X1	A0A0K9R7U9	Alpha-L-AF_C domain-containing protein.	Alpha-L-AF_C domain-containing protein.	0.902
SOVF_006930	SOVF_124140	A0A0K9S0X1	A0A0K9R1J5	Alpha-L-AF_C domain-containing protein.	Uncharacterized protein.	0.800
SOVF_006930	SOVF_143210	A0A0K9S0X1	A0A0K9QTE8	Alpha-L-AF_C domain-containing protein.	Uncharacterized protein.	0.800
SOVF_006930	SOVF_168180	A0A0K9S0X1	A0A0K9QMC1	Alpha-L-AF_C domain-containing protein.	Uncharacterized protein.	0.800
SOVF_006930	SOVF_183160	A0A0K9S0X1	A0A0K9QG11	Alpha-L-AF_C domain-containing protein.	Uncharacterized protein.	0.800
SOVF_010000	SOVF_006930	A0A0K9S1H6	A0A0K9S0X1	Aldo_ket_red domain-containing protein.	Alpha-L-AF_C domain-containing protein.	0.800
SOVF_010000	SOVF_102460	A0A0K9S1H6	A0A0K9R823	Aldo_ket_red domain-containing protein.	Alpha-L-AF_C domain-containing protein.	0.800
SOVF_010000	SOVF_103570	A0A0K9S1H6	A0A0K9R5Q6	Aldo_ket_red domain-containing protein.	GHMP_kinases_N domain-containing protein.	0.901
SOVF_010000	SOVF_103590	A0A0K9S1H6	A0A0K9R7U9	Aldo_ket_red domain-containing protein.	Alpha-L-AF_C domain-containing protein.	0.800
SOVF_044510	SOVF_006930	A0A0K9RR32	A0A0K9S0X1	Uncharacterized protein.	Alpha-L-AF_C domain-containing protein.	0.800
SOVF_044510	SOVF_102460	A0A0K9RR32	A0A0K9R823	Uncharacterized protein.	Alpha-L-AF_C domain-containing protein.	0.800
SOVF_044510	SOVF_103570	A0A0K9RR32	A0A0K9R5Q6	Uncharacterized protein.	GHMP_kinases_N domain-containing protein.	0.800
SOVF_044510	SOVF_103590	A0A0K9RR32	A0A0K9R7U9	Uncharacterized protein.	Alpha-L-AF_C domain-containing protein.	0.800
SOVF_068320	SOVF_006930	A0A0K9RIF6	A0A0K9S0X1	Uncharacterized protein.	Alpha-L-AF_C domain-containing protein.	0.800
SOVF_068320	SOVF_102460	A0A0K9RIF6	A0A0K9R823	Uncharacterized protein.	Alpha-L-AF_C domain-containing protein.	0.800