STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SOVF_091170Mitochondrial inner membrane protease ATP23; Belongs to the peptidase M76 family. (197 aa)    
Predicted Functional Partners:
SOVF_093080
CHCH domain-containing protein.
    
 
 0.687
SOVF_114020
Prohibitin.
    
 
 0.652
SOVF_108200
Prohibitin.
    
 
 0.652
SOVF_038380
Peptidase_M48 domain-containing protein.
    
 
 0.618
atpI
ATP synthase subunit a, chloroplastic; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane.
    
 
 0.617
SOVF_141670
Peptidase_M3 domain-containing protein.
      
 0.608
SOVF_209460
AMP_N domain-containing protein.
      
 0.599
SOVF_173050
Peptidase_S24 domain-containing protein.
    
 
 0.586
SOVF_185490
PRELI/MSF1 domain-containing protein.
      
 0.576
SOVF_107380
Uncharacterized protein.
      
 0.574
Your Current Organism:
Spinacia oleracea
NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach
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