STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SOVF_087290Isocitrate dehydrogenase [NADP]; Belongs to the isocitrate and isopropylmalate dehydrogenases family. (412 aa)    
Predicted Functional Partners:
SOVF_177160
Uncharacterized protein.
  
 0.994
SOVF_064910
Transket_pyr domain-containing protein.
   
 
 0.977
SOVF_010700
Transket_pyr domain-containing protein.
   
 
 0.977
SOVF_104730
Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
 0.962
SOVF_190780
Iso_dh domain-containing protein.
  
 0.960
SOVF_168950
Iso_dh domain-containing protein.
  
 0.960
SOVF_097290
Isocitrate dehydrogenase [NAD] subunit, mitochondrial.
  
 0.958
SOVF_149620
Citrate synthase; Belongs to the citrate synthase family.
  
 
 0.927
SOVF_139430
ELFV_dehydrog domain-containing protein; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
 0.919
SOVF_156880
L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.
  
 
 0.915
Your Current Organism:
Spinacia oleracea
NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach
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