SOVF_086420 protein (Spinacia oleracea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SOVF_086420

Protein kinase domain-containing protein. (709 aa)

Predicted Functional Partners:

SOVF_164440

0.667

SOVF_004220

0.667

SOVF_182980

0.649

SOVF_160930

0.628

SOVF_072290

0.578

SOVF_071360

0.544

SOVF_188250

0.468

SOVF_111890

0.461

SOVF_007430

0.453

SOVF_215920

0.443

Your Current Organism:

Spinacia oleracea

NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SOVF_004220	SOVF_071360	A0A0K9S3N7	A0A0K9RHC5	Uncharacterized protein.	Uncharacterized protein.	0.997
SOVF_004220	SOVF_072290	A0A0K9S3N7	A0A0K9RHF6	Uncharacterized protein.	Bms1-type G domain-containing protein.	0.996
SOVF_004220	SOVF_086420	A0A0K9S3N7	A0A0K9RD03	Uncharacterized protein.	Protein kinase domain-containing protein.	0.667
SOVF_004220	SOVF_160930	A0A0K9S3N7	A0A0K9QQ46	Uncharacterized protein.	RIO domain-containing protein.	0.996
SOVF_004220	SOVF_164440	A0A0K9S3N7	A0A0K9QNF7	Uncharacterized protein.	Uncharacterized protein.	0.543
SOVF_004220	SOVF_182980	A0A0K9S3N7	A0A0K9QHR8	Uncharacterized protein.	Uncharacterized protein.	0.997
SOVF_007430	SOVF_086420	A0A0K9S2D2	A0A0K9RD03	Uncharacterized protein.	Protein kinase domain-containing protein.	0.453
SOVF_007430	SOVF_111890	A0A0K9S2D2	A0A0K9R361	Uncharacterized protein.	PsbP domain-containing protein.	0.504
SOVF_007430	SOVF_215920	A0A0K9S2D2	A0A0K9Q7Q8	Uncharacterized protein.	Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.	0.524
SOVF_071360	SOVF_004220	A0A0K9RHC5	A0A0K9S3N7	Uncharacterized protein.	Uncharacterized protein.	0.997
SOVF_071360	SOVF_072290	A0A0K9RHC5	A0A0K9RHF6	Uncharacterized protein.	Bms1-type G domain-containing protein.	0.999
SOVF_071360	SOVF_086420	A0A0K9RHC5	A0A0K9RD03	Uncharacterized protein.	Protein kinase domain-containing protein.	0.544
SOVF_071360	SOVF_160930	A0A0K9RHC5	A0A0K9QQ46	Uncharacterized protein.	RIO domain-containing protein.	0.998
SOVF_071360	SOVF_164440	A0A0K9RHC5	A0A0K9QNF7	Uncharacterized protein.	Uncharacterized protein.	0.997
SOVF_071360	SOVF_182980	A0A0K9RHC5	A0A0K9QHR8	Uncharacterized protein.	Uncharacterized protein.	0.999
SOVF_072290	SOVF_004220	A0A0K9RHF6	A0A0K9S3N7	Bms1-type G domain-containing protein.	Uncharacterized protein.	0.996
SOVF_072290	SOVF_071360	A0A0K9RHF6	A0A0K9RHC5	Bms1-type G domain-containing protein.	Uncharacterized protein.	0.999
SOVF_072290	SOVF_086420	A0A0K9RHF6	A0A0K9RD03	Bms1-type G domain-containing protein.	Protein kinase domain-containing protein.	0.578
SOVF_072290	SOVF_160930	A0A0K9RHF6	A0A0K9QQ46	Bms1-type G domain-containing protein.	RIO domain-containing protein.	0.997
SOVF_072290	SOVF_164440	A0A0K9RHF6	A0A0K9QNF7	Bms1-type G domain-containing protein.	Uncharacterized protein.	0.996