STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SOVF_078990VDE domain-containing protein. (472 aa)    
Predicted Functional Partners:
SOVF_077800
Zeaxanthin epoxidase, chloroplastic; Converts zeaxanthin into antheraxanthin and subsequently violaxanthin. Involved in the epoxidation of zeaxanthin.
     
 0.989
SOVF_061630
Uncharacterized protein; Belongs to the cytochrome P450 family.
     
 0.953
SOVF_173090
Uncharacterized protein.
     
 0.945
SOVF_036160
Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.
     
 0.945
SOVF_115640
Zeta-carotene desaturase; Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.
   
  
 0.837
SOVF_121950
Uncharacterized protein.
      
 0.812
SOVF_144870
Uncharacterized protein.
   
  
 0.786
SOVF_049440
Uncharacterized protein.
   
  
 0.786
SOVF_122230
Uncharacterized protein.
   
  
 0.773
RPS1
30S ribosomal protein S1, chloroplastic; Component of the chloroplast ribosome (chloro-ribosome), a dedicated translation machinery responsible for the synthesis of chloroplast genome-encoded proteins, including proteins of the transcription and translation machinery and components of the photosynthetic apparatus. Actively engaged in the initiation complex formation via a strong mRNA-binding activity. Possesses a poly(A)-binding activity which might play a role as a control element in chloroplast mRNA translation. Belongs to the bacterial ribosomal protein bS1 family.
   
    0.714
Your Current Organism:
Spinacia oleracea
NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach
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