SOVF_079260 protein (Spinacia oleracea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SOVF_079260

Uncharacterized protein. (528 aa)

Predicted Functional Partners:

SOVF_098770

0.653

SOVF_064390

0.653

SOVF_042530

0.574

SOVF_023270

0.560

SOVF_142180

0.556

SOVF_071290

0.553

SOVF_102250

0.544

SOVF_065780

0.537

SOVF_119330

0.525

SOVF_184920

0.507

Your Current Organism:

Spinacia oleracea

NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SOVF_023270	SOVF_042530	A0A0K9RVH9	A0A0K9RPP9	Uncharacterized protein.	Uncharacterized protein.	0.983
SOVF_023270	SOVF_065780	A0A0K9RVH9	A0A0K9RHN1	Uncharacterized protein.	Uncharacterized protein.	0.999
SOVF_023270	SOVF_071290	A0A0K9RVH9	A0A0K9RHQ2	Uncharacterized protein.	Uncharacterized protein.	0.988
SOVF_023270	SOVF_079260	A0A0K9RVH9	A0A0K9RDJ8	Uncharacterized protein.	Uncharacterized protein.	0.560
SOVF_023270	SOVF_102250	A0A0K9RVH9	A0A0K9R886	Uncharacterized protein.	Uncharacterized protein.	0.998
SOVF_023270	SOVF_119330	A0A0K9RVH9	A0A0K9R0W9	Uncharacterized protein.	Uncharacterized protein.	0.977
SOVF_023270	SOVF_142180	A0A0K9RVH9	A0A0K9QVE0	Uncharacterized protein.	Uncharacterized protein.	0.988
SOVF_023270	SOVF_184920	A0A0K9RVH9	A0A0K9QH63	Uncharacterized protein.	Uncharacterized protein.	0.972
SOVF_042530	SOVF_023270	A0A0K9RPP9	A0A0K9RVH9	Uncharacterized protein.	Uncharacterized protein.	0.983
SOVF_042530	SOVF_065780	A0A0K9RPP9	A0A0K9RHN1	Uncharacterized protein.	Uncharacterized protein.	0.983
SOVF_042530	SOVF_071290	A0A0K9RPP9	A0A0K9RHQ2	Uncharacterized protein.	Uncharacterized protein.	0.984
SOVF_042530	SOVF_079260	A0A0K9RPP9	A0A0K9RDJ8	Uncharacterized protein.	Uncharacterized protein.	0.574
SOVF_042530	SOVF_102250	A0A0K9RPP9	A0A0K9R886	Uncharacterized protein.	Uncharacterized protein.	0.982
SOVF_042530	SOVF_119330	A0A0K9RPP9	A0A0K9R0W9	Uncharacterized protein.	Uncharacterized protein.	0.971
SOVF_042530	SOVF_142180	A0A0K9RPP9	A0A0K9QVE0	Uncharacterized protein.	Uncharacterized protein.	0.984
SOVF_042530	SOVF_184920	A0A0K9RPP9	A0A0K9QH63	Uncharacterized protein.	Uncharacterized protein.	0.972
SOVF_064390	SOVF_079260	A0A0K9RJX6	A0A0K9RDJ8	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	Uncharacterized protein.	0.653
SOVF_064390	SOVF_098770	A0A0K9RJX6	A0A0K9R796	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.900
SOVF_065780	SOVF_023270	A0A0K9RHN1	A0A0K9RVH9	Uncharacterized protein.	Uncharacterized protein.	0.999
SOVF_065780	SOVF_042530	A0A0K9RHN1	A0A0K9RPP9	Uncharacterized protein.	Uncharacterized protein.	0.983