STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SOVF_079850Uncharacterized protein. (120 aa)    
Predicted Functional Partners:
SOVF_094640
Uncharacterized protein.
      
 0.598
SOVF_202060
Uncharacterized protein.
   
  
 0.593
SOVF_083660
Uncharacterized protein.
   
   0.488
SOVF_086960
Uncharacterized protein.
   
   0.488
SOVF_193260
Pyridoxal phosphate homeostasis protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which may be involved in intracellular homeostatic regulation of pyridoxal 5'- phosphate (PLP), the active form of vitamin B6; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.
  
  
 0.482
SOVF_180130
Uncharacterized protein.
  
  
 0.482
SOVF_011240
Ala_racemase_N domain-containing protein; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.
  
  
 0.482
SOVF_047100
TF-B3 domain-containing protein.
      
 0.476
SOVF_153900
Uncharacterized protein.
  
  
 0.465
SOVF_133780
S4 RNA-binding domain-containing protein.
  
  
 0.465
Your Current Organism:
Spinacia oleracea
NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach
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