SOVF_067330 protein (Spinacia oleracea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SOVF_067330

TFIIS-type domain-containing protein. (111 aa)

Predicted Functional Partners:

SOVF_165990

0.995

SOVF_138370

0.995

SOVF_026860

0.989

SOVF_100230

0.988

SOVF_042120

0.988

SOVF_196250

0.972

SOVF_032000

0.972

SOVF_151770

0.971

SOVF_071840

0.969

SOVF_043640

0.966

Your Current Organism:

Spinacia oleracea

NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SOVF_026860	SOVF_032000	A0A0K9RER0	A0A0K9RV41	Uncharacterized protein.	Uncharacterized protein.	0.991
SOVF_026860	SOVF_042120	A0A0K9RER0	A0A0K9RPV4	Uncharacterized protein.	RPOLD domain-containing protein.	0.998
SOVF_026860	SOVF_043640	A0A0K9RER0	A0A0K9RRE0	Uncharacterized protein.	HTH TFE/IIEalpha-type domain-containing protein.	0.989
SOVF_026860	SOVF_067330	A0A0K9RER0	A0A0K9RH60	Uncharacterized protein.	TFIIS-type domain-containing protein.	0.989
SOVF_026860	SOVF_071840	A0A0K9RER0	A0A0K9RHL4	Uncharacterized protein.	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.	0.987
SOVF_026860	SOVF_100230	A0A0K9RER0	A0A0K9R6N5	Uncharacterized protein.	RPOL4c domain-containing protein.	0.996
SOVF_026860	SOVF_138370	A0A0K9RER0	A0A0K9QX45	Uncharacterized protein.	Uncharacterized protein.	0.999
SOVF_026860	SOVF_151770	A0A0K9RER0	A0A0K9QSZ8	Uncharacterized protein.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.977
SOVF_026860	SOVF_165990	A0A0K9RER0	A0A0K9QN96	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.998
SOVF_026860	SOVF_196250	A0A0K9RER0	A0A0K9QC14	Uncharacterized protein.	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.	0.991
SOVF_032000	SOVF_026860	A0A0K9RV41	A0A0K9RER0	Uncharacterized protein.	Uncharacterized protein.	0.991
SOVF_032000	SOVF_042120	A0A0K9RV41	A0A0K9RPV4	Uncharacterized protein.	RPOLD domain-containing protein.	0.990
SOVF_032000	SOVF_043640	A0A0K9RV41	A0A0K9RRE0	Uncharacterized protein.	HTH TFE/IIEalpha-type domain-containing protein.	0.958
SOVF_032000	SOVF_067330	A0A0K9RV41	A0A0K9RH60	Uncharacterized protein.	TFIIS-type domain-containing protein.	0.972
SOVF_032000	SOVF_071840	A0A0K9RV41	A0A0K9RHL4	Uncharacterized protein.	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.	0.953
SOVF_032000	SOVF_100230	A0A0K9RV41	A0A0K9R6N5	Uncharacterized protein.	RPOL4c domain-containing protein.	0.989
SOVF_032000	SOVF_138370	A0A0K9RV41	A0A0K9QX45	Uncharacterized protein.	Uncharacterized protein.	0.991
SOVF_032000	SOVF_151770	A0A0K9RV41	A0A0K9QSZ8	Uncharacterized protein.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.938
SOVF_032000	SOVF_165990	A0A0K9RV41	A0A0K9QN96	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.988
SOVF_032000	SOVF_196250	A0A0K9RV41	A0A0K9QC14	Uncharacterized protein.	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.	0.542