STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SOVF_066320Uncharacterized protein; Belongs to the argonaute family. (1009 aa)    
Predicted Functional Partners:
SOVF_144700
Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.
   
 0.746
SOVF_198830
Uncharacterized protein.
   
 0.745
SOVF_033880
Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.
   
 0.738
SOVF_216260
Uncharacterized protein.
   
 0.686
SOVF_022780
Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.
   
 0.686
SOVF_104140
Uncharacterized protein.
   
 0.648
SOVF_104130
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.648
SOVF_093620
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.594
SOVF_152870
PABS domain-containing protein; Belongs to the spermidine/spermine synthase family.
      
 0.588
SOVF_186640
Aamy domain-containing protein.
   
  
 0.586
Your Current Organism:
Spinacia oleracea
NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach
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