STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SOVF_069610WD_REPEATS_REGION domain-containing protein. (350 aa)    
Predicted Functional Partners:
SOVF_151540
Peptidase S59 domain-containing protein.
   
 0.980
SOVF_043260
Peptidase S59 domain-containing protein.
   
 0.980
SOVF_003200
Uncharacterized protein.
   
 0.950
SOVF_175850
Uncharacterized protein.
    
 0.915
SOVF_118420
C2H2-type domain-containing protein.
    
 0.915
SOVF_155630
WD_REPEATS_REGION domain-containing protein.
  
  
 
0.901
SOVF_013630
Nup54 domain-containing protein.
   
 0.901
SOVF_066800
WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.
   
 0.870
SOVF_068150
Nuclear pore complex protein NUP35.
   
 
 0.865
SOVF_158950
Uncharacterized protein.
    
 0.855
Your Current Organism:
Spinacia oleracea
NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.