STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SOVF_069480B30.2/SPRY domain-containing protein. (655 aa)    
Predicted Functional Partners:
SOVF_136900
RRM domain-containing protein.
   
 0.787
SOVF_138370
Uncharacterized protein.
     
 0.680
SOVF_060000
Nuclear cap-binding protein subunit 2.
    
  0.670
TIC214
Protein TIC 214; Involved in protein precursor import into chloroplasts. May be part of an intermediate translocation complex acting as a protein- conducting channel at the inner envelope. Belongs to the TIC214 family.
   
 0.655
SOVF_042120
RPOLD domain-containing protein.
     
 0.630
SOVF_153760
MIF4G domain-containing protein.
   
 0.610
SOVF_151770
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
   
  0.608
SOVF_026860
Uncharacterized protein.
   
 
  0.575
SOVF_150620
TFIIF_beta domain-containing protein.
   
 
  0.559
SOVF_139270
TFIIF_beta domain-containing protein.
   
 
  0.559
Your Current Organism:
Spinacia oleracea
NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach
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