STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SOVF_060920Vps8 domain-containing protein. (1645 aa)    
Predicted Functional Partners:
SOVF_184220
Pep3_Vps18 domain-containing protein.
    
 0.962
SOVF_025500
Protein VACUOLELESS1; Required for vacuole biogenesis and vacuole enlargment in dividing and expanding cells. Involved in the docking or fusion of prevacuolar vesicles; Belongs to the VPS16 family.
    
 0.962
SOVF_150510
RING-type domain-containing protein.
 
  
  0.956
SOVF_216660
Uncharacterized protein.
    
 0.907
SOVF_146110
CNH domain-containing protein.
  
 
 0.906
SOVF_053470
CNH domain-containing protein.
   
 
 0.858
SOVF_080170
Vacuolar protein sorting-associated protein 41 homolog; Required for vacuolar assembly and vacuolar traffic.
   
 0.813
SOVF_214940
RING-type domain-containing protein.
    
 
 0.807
SOVF_100400
Uncharacterized protein.
    
 
 0.807
SOVF_209030
Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.
    
 
 0.806
Your Current Organism:
Spinacia oleracea
NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach
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