STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SOVF_059370Uncharacterized protein. (202 aa)    
Predicted Functional Partners:
SOVF_033830
Uncharacterized protein.
   
 
 0.722
SOVF_066170
PsbP domain-containing protein.
   
 
 0.631
psbC
Photosystem II CP43 reaction center protein; One of the components of the core complex of photosystem II (PSII). It binds chlorophyll and helps catalyze the primary light- induced photochemical processes of PSII. PSII is a light-driven water:plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation.
     
 0.617
SOVF_014510
PsbP domain-containing protein.
   
 
 0.590
SOVF_012060
Photosystem II reaction center Psb28 protein; Belongs to the Psb28 family.
     
 0.544
SOVF_111890
PsbP domain-containing protein.
   
 
 0.542
SOVF_065780
Uncharacterized protein.
     
 0.538
SOVF_142180
Uncharacterized protein.
     
 0.518
SOVF_132650
Uncharacterized protein.
   
 
 0.466
SOVF_141710
Uncharacterized protein.
   
  
 0.459
Your Current Organism:
Spinacia oleracea
NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach
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