STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SOVF_0589803'-5' exonuclease domain-containing protein. (541 aa)    
Predicted Functional Partners:
SOVF_059860
WD_REPEATS_REGION domain-containing protein.
   
    0.624
SOVF_135060
Uncharacterized protein.
   
    0.622
SOVF_161550
WD_REPEATS_REGION domain-containing protein.
   
    0.620
SOVF_069000
Uncharacterized protein.
   
    0.619
SOVF_194610
Ribosomal_L7Ae domain-containing protein.
   
    0.487
SOVF_115400
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
    0.487
SOVF_178070
Structural maintenance of chromosomes protein.
   
    0.482
SOVF_133370
DUF641 domain-containing protein.
   
    0.482
SOVF_175540
Uncharacterized protein.
   
    0.437
SOVF_115370
Nop domain-containing protein.
   
    0.437
Your Current Organism:
Spinacia oleracea
NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach
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