STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SOVF_058380Uncharacterized protein. (298 aa)    
Predicted Functional Partners:
SOVF_060100
Uncharacterized protein.
      
 0.618
SOVF_051790
Checkpoint protein; Belongs to the HUS1 family.
    
  0.612
SOVF_002770
Polyketide_cyc domain-containing protein.
      
 0.568
SOVF_070860
Uncharacterized protein; Belongs to the rad9 family.
     
  0.552
SOVF_195290
Uncharacterized protein.
      
 0.443
SOVF_042780
AA_TRNA_LIGASE_II domain-containing protein.
     
 0.443
SOVF_213150
AT-hook motif nuclear-localized protein; Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs).
      
 0.426
Your Current Organism:
Spinacia oleracea
NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.