STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SOVF_063140Uncharacterized protein. (563 aa)    
Predicted Functional Partners:
SOVF_072760
3'-5' exonuclease domain-containing protein.
  
 0.985
SOVF_000900
ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.
  
 0.985
SOVF_051380
Uncharacterized protein.
   
 0.949
SOVF_114970
Uncharacterized protein.
   
 0.942
SOVF_088320
DNA_MISMATCH_REPAIR_2 domain-containing protein.
   
 0.939
SOVF_087970
DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR).
   
 0.939
SOVF_182140
DNA_mis_repair domain-containing protein.
   
 0.937
SOVF_126060
Mlh1_C domain-containing protein.
   
 0.937
SOVF_176060
Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.
   
 0.930
SOVF_097020
INTEIN_C_TER domain-containing protein; Belongs to the MRE11/RAD32 family.
   
 0.930
Your Current Organism:
Spinacia oleracea
NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.