STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SOVF_054900PseudoU_synth_2 domain-containing protein. (483 aa)    
Predicted Functional Partners:
SOVF_091850
Uncharacterized protein.
  
 
 0.675
SOVF_110110
TRUD domain-containing protein.
    
 
 0.632
SOVF_117710
SpoU_methylase domain-containing protein.
  
 
 0.583
SOVF_095190
G domain-containing protein.
   
 
 0.549
SOVF_100280
Uncharacterized protein.
    
 
 0.539
RPL24
50S ribosomal protein L24, chloroplastic; Component of the chloroplast ribosome (chloro-ribosome), a dedicated translation machinery responsible for the synthesis of chloroplast genome-encoded proteins, including proteins of the transcription and translation machinery and components of the photosynthetic apparatus; Belongs to the universal ribosomal protein uL24 family.
   
   0.534
SOVF_180990
L51_S25_CI-B8 domain-containing protein.
   
   0.527
SOVF_141050
Uncharacterized protein.
  
   0.493
RPL13
50S ribosomal protein L13, chloroplastic; Component of the chloroplast ribosome (chloro-ribosome), a dedicated translation machinery responsible for the synthesis of chloroplast genome-encoded proteins, including proteins of the transcription and translation machinery and components of the photosynthetic apparatus; Belongs to the universal ribosomal protein uL13 family.
  
   0.493
SOVF_109560
Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.
   
 
 0.479
Your Current Organism:
Spinacia oleracea
NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach
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