SOVF_048120 protein (Spinacia oleracea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SOVF_048120

CN hydrolase domain-containing protein. (103 aa)

Predicted Functional Partners:

SOVF_048130

0.904

SOVF_131170

0.671

SOVF_126120

0.651

SOVF_106090

0.555

SOVF_009150

0.555

SOVF_030960

0.545

SOVF_152870

0.527

SOVF_008130

0.527

SOVF_006870

0.527

SOVF_014590

0.514

Your Current Organism:

Spinacia oleracea

NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SOVF_006870	SOVF_048120	A0A0K9S2Q5	A0A0K9RN45	PABS domain-containing protein; Belongs to the spermidine/spermine synthase family.	CN hydrolase domain-containing protein.	0.527
SOVF_006870	SOVF_048130	A0A0K9S2Q5	A0A0K9RPT1	PABS domain-containing protein; Belongs to the spermidine/spermine synthase family.	CN hydrolase domain-containing protein.	0.555
SOVF_006870	SOVF_131170	A0A0K9S2Q5	A0A0K9QX70	PABS domain-containing protein; Belongs to the spermidine/spermine synthase family.	Uncharacterized protein.	0.624
SOVF_006870	SOVF_152870	A0A0K9S2Q5	A0A0K9QQH9	PABS domain-containing protein; Belongs to the spermidine/spermine synthase family.	PABS domain-containing protein; Belongs to the spermidine/spermine synthase family.	0.923
SOVF_008130	SOVF_048120	A0A0K9S2A3	A0A0K9RN45	PABS domain-containing protein.	CN hydrolase domain-containing protein.	0.527
SOVF_008130	SOVF_048130	A0A0K9S2A3	A0A0K9RPT1	PABS domain-containing protein.	CN hydrolase domain-containing protein.	0.527
SOVF_008130	SOVF_131170	A0A0K9S2A3	A0A0K9QX70	PABS domain-containing protein.	Uncharacterized protein.	0.622
SOVF_009150	SOVF_048120	A0A0K9S046	A0A0K9RN45	Amidohydro-rel domain-containing protein.	CN hydrolase domain-containing protein.	0.555
SOVF_009150	SOVF_048130	A0A0K9S046	A0A0K9RPT1	Amidohydro-rel domain-containing protein.	CN hydrolase domain-containing protein.	0.555
SOVF_014590	SOVF_048120	A0A0K9RYD6	A0A0K9RN45	Nudix hydrolase domain-containing protein; Belongs to the Nudix hydrolase family.	CN hydrolase domain-containing protein.	0.514
SOVF_014590	SOVF_048130	A0A0K9RYD6	A0A0K9RPT1	Nudix hydrolase domain-containing protein; Belongs to the Nudix hydrolase family.	CN hydrolase domain-containing protein.	0.514
SOVF_014590	SOVF_126120	A0A0K9RYD6	A0A0K9QYT1	Nudix hydrolase domain-containing protein; Belongs to the Nudix hydrolase family.	Nicotinamide-nucleotide adenylyltransferase.	0.654
SOVF_030960	SOVF_048120	A0A0K9RUM5	A0A0K9RN45	Aminotran_5 domain-containing protein.	CN hydrolase domain-containing protein.	0.545
SOVF_030960	SOVF_048130	A0A0K9RUM5	A0A0K9RPT1	Aminotran_5 domain-containing protein.	CN hydrolase domain-containing protein.	0.545
SOVF_048120	SOVF_006870	A0A0K9RN45	A0A0K9S2Q5	CN hydrolase domain-containing protein.	PABS domain-containing protein; Belongs to the spermidine/spermine synthase family.	0.527
SOVF_048120	SOVF_008130	A0A0K9RN45	A0A0K9S2A3	CN hydrolase domain-containing protein.	PABS domain-containing protein.	0.527
SOVF_048120	SOVF_009150	A0A0K9RN45	A0A0K9S046	CN hydrolase domain-containing protein.	Amidohydro-rel domain-containing protein.	0.555
SOVF_048120	SOVF_014590	A0A0K9RN45	A0A0K9RYD6	CN hydrolase domain-containing protein.	Nudix hydrolase domain-containing protein; Belongs to the Nudix hydrolase family.	0.514
SOVF_048120	SOVF_030960	A0A0K9RN45	A0A0K9RUM5	CN hydrolase domain-containing protein.	Aminotran_5 domain-containing protein.	0.545
SOVF_048120	SOVF_048130	A0A0K9RN45	A0A0K9RPT1	CN hydrolase domain-containing protein.	CN hydrolase domain-containing protein.	0.904