STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SOVF_050990Uncharacterized protein. (410 aa)    
Predicted Functional Partners:
SOVF_089360
VOC domain-containing protein.
    
 0.548
SOVF_022220
Uncharacterized protein.
    
 0.500
SOVF_080620
Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.
   
 0.443
SOVF_163280
Purple acid phosphatase.
      
 0.426
SOVF_088410
RING-type domain-containing protein.
      
 0.426
SOVF_017540
Uncharacterized protein.
      
 0.426
SOVF_049920
Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
    
 0.420
SOVF_199180
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 0.413
SOVF_183780
Uncharacterized protein.
   
 0.413
SOVF_165300
Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.
   
 0.413
Your Current Organism:
Spinacia oleracea
NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach
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