STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SOVF_038810Uncharacterized protein. (938 aa)    
Predicted Functional Partners:
SOVF_064250
HORMA domain-containing protein.
   
 
 0.624
SOVF_049360
Uncharacterized protein.
   
 
 0.593
SOVF_088320
DNA_MISMATCH_REPAIR_2 domain-containing protein.
   
  
 0.582
SOVF_122270
Uncharacterized protein.
      
 0.571
SOVF_120440
Uncharacterized protein.
   
 
 0.509
SOVF_063370
RECA_2 domain-containing protein.
   
  
 0.483
SOVF_044610
Uncharacterized protein; Belongs to the RecA family.
   
  
 0.483
SOVF_127370
RING-type domain-containing protein.
      
 0.481
SOVF_000050
Uncharacterized protein.
      
 0.474
SOVF_098510
Uncharacterized protein.
   
  
 0.455
Your Current Organism:
Spinacia oleracea
NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.