SOVF_043520 protein (Spinacia oleracea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SOVF_043520

Uncharacterized protein. (382 aa)

Predicted Functional Partners:

SOVF_162420

0.952

SOVF_128330

0.901

SOVF_134200

0.892

SOVF_014990

0.812

SOVF_178590

0.783

SOVF_086280

0.783

SOVF_212440

0.771

SOVF_197610

0.759

SOVF_006830

0.759

SOVF_006840

0.759

Your Current Organism:

Spinacia oleracea

NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SOVF_006830	SOVF_043520	A0A0K9S110	A0A0K9RRG2	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	Uncharacterized protein.	0.759
SOVF_006830	SOVF_128330	A0A0K9S110	A0A0K9QY28	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	Uncharacterized protein.	0.759
SOVF_006830	SOVF_162420	A0A0K9S110	A0A0K9QMI0	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	Uncharacterized protein.	0.940
SOVF_006840	SOVF_043520	A0A0K9S2J2	A0A0K9RRG2	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	Uncharacterized protein.	0.759
SOVF_006840	SOVF_128330	A0A0K9S2J2	A0A0K9QY28	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	Uncharacterized protein.	0.759
SOVF_006840	SOVF_162420	A0A0K9S2J2	A0A0K9QMI0	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	Uncharacterized protein.	0.940
SOVF_014990	SOVF_043520	A0A0K9S036	A0A0K9RRG2	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	Uncharacterized protein.	0.812
SOVF_014990	SOVF_128330	A0A0K9S036	A0A0K9QY28	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	Uncharacterized protein.	0.812
SOVF_014990	SOVF_162420	A0A0K9S036	A0A0K9QMI0	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	Uncharacterized protein.	0.946
SOVF_043520	SOVF_006830	A0A0K9RRG2	A0A0K9S110	Uncharacterized protein.	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	0.759
SOVF_043520	SOVF_006840	A0A0K9RRG2	A0A0K9S2J2	Uncharacterized protein.	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	0.759
SOVF_043520	SOVF_014990	A0A0K9RRG2	A0A0K9S036	Uncharacterized protein.	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.812
SOVF_043520	SOVF_086280	A0A0K9RRG2	A0A0K9RB85	Uncharacterized protein.	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.783
SOVF_043520	SOVF_128330	A0A0K9RRG2	A0A0K9QY28	Uncharacterized protein.	Uncharacterized protein.	0.901
SOVF_043520	SOVF_134200	A0A0K9RRG2	A0A0K9QXN0	Uncharacterized protein.	S-formylglutathione hydrolase; Serine hydrolase involved in the detoxification of formaldehyde.	0.892
SOVF_043520	SOVF_162420	A0A0K9RRG2	A0A0K9QMI0	Uncharacterized protein.	Uncharacterized protein.	0.952
SOVF_043520	SOVF_178590	A0A0K9RRG2	A0A0K9QJ36	Uncharacterized protein.	Aldedh domain-containing protein.	0.783
SOVF_043520	SOVF_197610	A0A0K9RRG2	A0A0K9QBN2	Uncharacterized protein.	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	0.759
SOVF_043520	SOVF_212440	A0A0K9RRG2	A0A0K9Q8R1	Uncharacterized protein.	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.771
SOVF_086280	SOVF_043520	A0A0K9RB85	A0A0K9RRG2	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	Uncharacterized protein.	0.783