SOVF_036510 protein (Spinacia oleracea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SOVF_036510

Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone. (643 aa)

Predicted Functional Partners:

SOVF_158830

0.988

SOVF_172030

0.959

SOVF_208890

0.944

SOVF_109260

0.776

SOVF_046270

0.776

SOVF_183780

0.713

SOVF_003960

0.584

SOVF_102200

0.580

SOVF_161890

0.572

SOVF_097970

0.572

Your Current Organism:

Spinacia oleracea

NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SOVF_003960	SOVF_036510	A0A0K9S1Y5	A0A0K9RRL1	FAD-binding PCMH-type domain-containing protein.	Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone.	0.584
SOVF_003960	SOVF_097970	A0A0K9S1Y5	A0A0K9R7E2	FAD-binding PCMH-type domain-containing protein.	DAO domain-containing protein.	0.594
SOVF_003960	SOVF_158830	A0A0K9S1Y5	A0A0K9QNP6	FAD-binding PCMH-type domain-containing protein.	ETF domain-containing protein.	0.744
SOVF_003960	SOVF_161890	A0A0K9S1Y5	A0A0K9QMP7	FAD-binding PCMH-type domain-containing protein.	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	0.504
SOVF_003960	SOVF_172030	A0A0K9S1Y5	A0A0K9QJJ0	FAD-binding PCMH-type domain-containing protein.	ETF domain-containing protein.	0.581
SOVF_003960	SOVF_183780	A0A0K9S1Y5	A0A0K9QFV6	FAD-binding PCMH-type domain-containing protein.	Uncharacterized protein.	0.574
SOVF_003960	SOVF_208890	A0A0K9S1Y5	A0A0K9QAA8	FAD-binding PCMH-type domain-containing protein.	ETF_alpha domain-containing protein.	0.581
SOVF_036510	SOVF_003960	A0A0K9RRL1	A0A0K9S1Y5	Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone.	FAD-binding PCMH-type domain-containing protein.	0.584
SOVF_036510	SOVF_046270	A0A0K9RRL1	A0A0K9RNN0	Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone.	Pyr_redox_2 domain-containing protein.	0.776
SOVF_036510	SOVF_097970	A0A0K9RRL1	A0A0K9R7E2	Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone.	DAO domain-containing protein.	0.572
SOVF_036510	SOVF_102200	A0A0K9RRL1	A0A0K9R673	Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone.	Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.	0.580
SOVF_036510	SOVF_109260	A0A0K9RRL1	A0A0K9R406	Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone.	Uncharacterized protein.	0.776
SOVF_036510	SOVF_158830	A0A0K9RRL1	A0A0K9QNP6	Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone.	ETF domain-containing protein.	0.988
SOVF_036510	SOVF_161890	A0A0K9RRL1	A0A0K9QMP7	Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone.	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	0.572
SOVF_036510	SOVF_172030	A0A0K9RRL1	A0A0K9QJJ0	Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone.	ETF domain-containing protein.	0.959
SOVF_036510	SOVF_183780	A0A0K9RRL1	A0A0K9QFV6	Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone.	Uncharacterized protein.	0.713
SOVF_036510	SOVF_208890	A0A0K9RRL1	A0A0K9QAA8	Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone.	ETF_alpha domain-containing protein.	0.944
SOVF_046270	SOVF_036510	A0A0K9RNN0	A0A0K9RRL1	Pyr_redox_2 domain-containing protein.	Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone.	0.776
SOVF_046270	SOVF_109260	A0A0K9RNN0	A0A0K9R406	Pyr_redox_2 domain-containing protein.	Uncharacterized protein.	0.901
SOVF_046270	SOVF_158830	A0A0K9RNN0	A0A0K9QNP6	Pyr_redox_2 domain-containing protein.	ETF domain-containing protein.	0.914