STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SOVF_041730Uncharacterized protein. (904 aa)    
Predicted Functional Partners:
SOVF_129660
Uncharacterized protein.
   
 0.781
SOVF_049100
MPN domain-containing protein.
    
 0.762
SOVF_192840
Tify domain-containing protein.
   
 0.699
SOVF_000050
Uncharacterized protein.
    
 0.674
SOVF_098770
GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.
   
 
 0.642
SOVF_064390
GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.
   
 
 0.642
SOVF_126990
ERCC4 domain-containing protein.
    
 0.605
SOVF_127000
PPIase cyclophilin-type domain-containing protein.
    
 0.605
SOVF_202690
Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.
   
 0.591
SOVF_129770
Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.
   
 0.591
Your Current Organism:
Spinacia oleracea
NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach
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