STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SOVF_034450RRM domain-containing protein. (114 aa)    
Predicted Functional Partners:
SOVF_041310
Telomerase reverse transcriptase; Telomerase is a ribonucleoprotein enzyme essential for the replication of chromosome termini in most eukaryotes. It elongates telomeres. It is a reverse transcriptase that adds simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme.
    
 
 0.613
SOVF_100680
RRM domain-containing protein.
  
 
 0.578
SOVF_163080
RRM domain-containing protein.
  
 
 0.577
SOVF_018580
Uncharacterized protein.
  
 
 
 0.557
SOVF_189400
Uncharacterized protein.
  
 
 0.543
SOVF_176670
Uncharacterized protein.
  
 
 0.540
SOVF_178860
Uncharacterized protein.
  
 
 0.539
PSRP2
30S ribosomal protein 2, chloroplastic; Component of the chloroplast ribosome (chloro-ribosome), a dedicated translation machinery responsible for the synthesis of chloroplast genome-encoded proteins, including proteins of the transcription and translation machinery and components of the photosynthetic apparatus. cS22 may have a role in the recruitment of stored chloroplast mRNAs for active protein synthesis.
  
     0.532
SOVF_054140
Uncharacterized protein.
  
 
 0.514
SOVF_023820
RRM domain-containing protein.
  
 
  0.513
Your Current Organism:
Spinacia oleracea
NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach
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