STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SOVF_039180Uncharacterized protein. (124 aa)    
Predicted Functional Partners:
SOVF_022220
Uncharacterized protein.
  
 0.709
SOVF_060120
SANT domain-containing protein.
      
 0.596
SOVF_085030
APC1_C domain-containing protein.
      
 0.573
SOVF_092660
Uncharacterized protein.
   
 0.521
SOVF_029060
Uncharacterized protein.
    
 0.521
SOVF_024900
Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
   
 0.520
SOVF_168900
Uncharacterized protein.
   
  0.512
SOVF_158950
Uncharacterized protein.
   
 0.506
SOVF_160390
Uncharacterized protein.
   
  0.505
SOVF_109910
AMP-binding domain-containing protein.
  
 
 0.492
Your Current Organism:
Spinacia oleracea
NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach
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