SOVF_032180 protein (Spinacia oleracea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SOVF_032180

Uncharacterized protein; Belongs to the PTH family. (236 aa)

Predicted Functional Partners:

SOVF_197200

0.659

SOVF_183590

0.556

SOVF_176190

0.556

SOVF_127090

0.556

SOVF_092910

0.556

SOVF_028800

0.556

SOVF_184800

0.479

SOVF_094360

0.457

SOVF_200050

0.441

NCS6

0.441

Your Current Organism:

Spinacia oleracea

NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NCS6	SOVF_032180	A0A0K9QTZ3	A0A0K9RT31	Cytoplasmic tRNA 2-thiolation protein 1; Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Directly binds tRNAs and probably acts by catalyzing adenylation of tRNAs, an intermediate required for 2-thiolation. It is unclear whether it acts as a sulfurtransferase that transfers sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position.	Uncharacterized protein; Belongs to the PTH family.	0.441
NCS6	SOVF_094360	A0A0K9QTZ3	A0A0K9R8M6	Cytoplasmic tRNA 2-thiolation protein 1; Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Directly binds tRNAs and probably acts by catalyzing adenylation of tRNAs, an intermediate required for 2-thiolation. It is unclear whether it acts as a sulfurtransferase that transfers sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position.	Uncharacterized protein.	0.493
NCS6	SOVF_197200	A0A0K9QTZ3	A0A0K9QDF1	Cytoplasmic tRNA 2-thiolation protein 1; Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Directly binds tRNAs and probably acts by catalyzing adenylation of tRNAs, an intermediate required for 2-thiolation. It is unclear whether it acts as a sulfurtransferase that transfers sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position.	RF_PROK_I domain-containing protein.	0.493
SOVF_028800	SOVF_032180	A0A0K9RTX1	A0A0K9RT31	NAC domain-containing protein.	Uncharacterized protein; Belongs to the PTH family.	0.556
SOVF_028800	SOVF_094360	A0A0K9RTX1	A0A0K9R8M6	NAC domain-containing protein.	Uncharacterized protein.	0.456
SOVF_032180	NCS6	A0A0K9RT31	A0A0K9QTZ3	Uncharacterized protein; Belongs to the PTH family.	Cytoplasmic tRNA 2-thiolation protein 1; Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Directly binds tRNAs and probably acts by catalyzing adenylation of tRNAs, an intermediate required for 2-thiolation. It is unclear whether it acts as a sulfurtransferase that transfers sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position.	0.441
SOVF_032180	SOVF_028800	A0A0K9RT31	A0A0K9RTX1	Uncharacterized protein; Belongs to the PTH family.	NAC domain-containing protein.	0.556
SOVF_032180	SOVF_092910	A0A0K9RT31	A0A0K9R957	Uncharacterized protein; Belongs to the PTH family.	Uncharacterized protein.	0.556
SOVF_032180	SOVF_094360	A0A0K9RT31	A0A0K9R8M6	Uncharacterized protein; Belongs to the PTH family.	Uncharacterized protein.	0.457
SOVF_032180	SOVF_127090	A0A0K9RT31	A0A0K9R033	Uncharacterized protein; Belongs to the PTH family.	Uncharacterized protein.	0.556
SOVF_032180	SOVF_176190	A0A0K9RT31	A0A0K9QIA2	Uncharacterized protein; Belongs to the PTH family.	Obg-like ATPase 1; Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP.	0.556
SOVF_032180	SOVF_183590	A0A0K9RT31	A0A0K9QFW1	Uncharacterized protein; Belongs to the PTH family.	Obg-like ATPase 1; Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP.	0.556
SOVF_032180	SOVF_184800	A0A0K9RT31	A0A0K9QFI5	Uncharacterized protein; Belongs to the PTH family.	Ribosomal_TL5_C domain-containing protein.	0.479
SOVF_032180	SOVF_197200	A0A0K9RT31	A0A0K9QDF1	Uncharacterized protein; Belongs to the PTH family.	RF_PROK_I domain-containing protein.	0.659
SOVF_032180	SOVF_200050	A0A0K9RT31	A0A0K9QAV0	Uncharacterized protein; Belongs to the PTH family.	Aminotran_5 domain-containing protein.	0.441
SOVF_092910	SOVF_032180	A0A0K9R957	A0A0K9RT31	Uncharacterized protein.	Uncharacterized protein; Belongs to the PTH family.	0.556
SOVF_092910	SOVF_094360	A0A0K9R957	A0A0K9R8M6	Uncharacterized protein.	Uncharacterized protein.	0.456
SOVF_094360	NCS6	A0A0K9R8M6	A0A0K9QTZ3	Uncharacterized protein.	Cytoplasmic tRNA 2-thiolation protein 1; Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Directly binds tRNAs and probably acts by catalyzing adenylation of tRNAs, an intermediate required for 2-thiolation. It is unclear whether it acts as a sulfurtransferase that transfers sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position.	0.493
SOVF_094360	SOVF_028800	A0A0K9R8M6	A0A0K9RTX1	Uncharacterized protein.	NAC domain-containing protein.	0.456
SOVF_094360	SOVF_032180	A0A0K9R8M6	A0A0K9RT31	Uncharacterized protein.	Uncharacterized protein; Belongs to the PTH family.	0.457