STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SOVF_032530BED-type domain-containing protein. (488 aa)    
Predicted Functional Partners:
SOVF_130160
BED-type domain-containing protein.
  
     0.512
SOVF_210230
Uncharacterized protein.
  
     0.508
SOVF_091010
BED-type domain-containing protein.
  
     0.501
SOVF_011100
Uncharacterized protein.
  
     0.492
SOVF_039210
Dimer_Tnp_hAT domain-containing protein.
  
     0.491
SOVF_175280
BED-type domain-containing protein.
  
     0.487
SOVF_009420
Uncharacterized protein.
  
     0.481
SOVF_107590
BED-type domain-containing protein.
  
     0.477
SOVF_057710
BED-type domain-containing protein.
  
     0.473
SOVF_200190
Dimer_Tnp_hAT domain-containing protein.
  
     0.450
Your Current Organism:
Spinacia oleracea
NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.