STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SOVF_027170Uncharacterized protein. (429 aa)    
Predicted Functional Partners:
SOVF_144800
Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.
   
 0.989
SOVF_115790
GLUE N-terminal domain-containing protein.
    
 0.979
SOVF_179590
VPS37 C-terminal domain-containing protein.
    
 0.967
SOVF_039110
VPS37 C-terminal domain-containing protein.
    
 0.967
SOVF_114420
Uncharacterized protein.
    
 0.965
SOVF_115180
Vacuolar protein sorting-associated protein; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family.
    
 0.946
SOVF_192800
Uncharacterized protein.
    
 0.930
SOVF_205660
FYVE-type domain-containing protein.
    
 0.927
SOVF_193390
Uncharacterized protein.
     
 0.879
SOVF_103350
Uncharacterized protein.
   
 0.877
Your Current Organism:
Spinacia oleracea
NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach
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