STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SOVF_029130Lactamase_B_4 domain-containing protein. (945 aa)    
Predicted Functional Partners:
SOVF_021280
Lactamase_B domain-containing protein.
     
 0.954
SOVF_115720
Lactamase_B domain-containing protein.
     
 0.918
SOVF_100550
Uncharacterized protein.
   
   0.828
SOVF_076410
Uncharacterized protein.
   
   0.828
SOVF_026160
Uncharacterized protein.
   
    0.633
SOVF_033800
AMP_N domain-containing protein.
     
 0.623
SOVF_106920
WD_REPEATS_REGION domain-containing protein.
   
    0.615
SOVF_141670
Peptidase_M3 domain-containing protein.
  
  
 0.610
SOVF_000400
Exportin-T; tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Belongs to the exportin family.
   
  
 0.610
SOVF_013530
Uncharacterized protein.
      
 0.582
Your Current Organism:
Spinacia oleracea
NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach
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