STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SOVF_021730Uncharacterized protein. (451 aa)    
Predicted Functional Partners:
SOVF_040860
Uncharacterized protein.
    
 
 0.675
SOVF_069950
Uncharacterized protein.
      
 0.662
SOVF_121750
Protein kinase domain-containing protein.
      
 0.478
SOVF_056520
Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.
    
 
 0.457
SOVF_158320
Uncharacterized protein.
  
0.433
SOVF_067150
Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation. Belongs to the ATG12 family.
      
 0.426
SOVF_052660
Autophagy protein 5; Required for autophagy.
      
 0.426
SOVF_031900
Uncharacterized protein.
    
 
 0.418
SOVF_207680
Uncharacterized protein.
   
 0.414
Your Current Organism:
Spinacia oleracea
NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach
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