SOVF_028180 protein (Spinacia oleracea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SOVF_028180

Uncharacterized protein. (337 aa)

Predicted Functional Partners:

SOVF_083490

0.579

SOVF_195490

0.522

SOVF_167950

0.522

SOVF_114470

0.522

SOVF_114480

0.522

SOVF_087310

0.522

SOVF_078280

0.522

SOVF_056660

0.522

SOVF_182640

0.450

SOVF_168780

0.431

Your Current Organism:

Spinacia oleracea

NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SOVF_028180	SOVF_056660	A0A0K9RVX5	A0A0K9RKE5	Uncharacterized protein.	Uncharacterized protein.	0.522
SOVF_028180	SOVF_078280	A0A0K9RVX5	A0A0K9RDR6	Uncharacterized protein.	Urease; In the C-terminal section; belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family.	0.522
SOVF_028180	SOVF_083490	A0A0K9RVX5	A0A0K9RDV8	Uncharacterized protein.	Prenylcys_lyase domain-containing protein.	0.579
SOVF_028180	SOVF_087310	A0A0K9RVX5	A0A0K9RCN0	Uncharacterized protein.	Uncharacterized protein.	0.522
SOVF_028180	SOVF_114470	A0A0K9RVX5	A0A0K9R2E1	Uncharacterized protein.	F-box domain-containing protein.	0.522
SOVF_028180	SOVF_114480	A0A0K9RVX5	A0A0K9R4F0	Uncharacterized protein.	Dynein light chain.	0.522
SOVF_028180	SOVF_167950	A0A0K9RVX5	A0A0K9QKT1	Uncharacterized protein.	Dynein light chain.	0.522
SOVF_028180	SOVF_168780	A0A0K9RVX5	A0A0K9QM65	Uncharacterized protein.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.431
SOVF_028180	SOVF_182640	A0A0K9RVX5	A0A0K9QG80	Uncharacterized protein.	Exocyst complex component SEC5; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.	0.450
SOVF_028180	SOVF_195490	A0A0K9RVX5	A0A0K9QC89	Uncharacterized protein.	Dynein light chain.	0.522
SOVF_056660	SOVF_028180	A0A0K9RKE5	A0A0K9RVX5	Uncharacterized protein.	Uncharacterized protein.	0.522
SOVF_056660	SOVF_087310	A0A0K9RKE5	A0A0K9RCN0	Uncharacterized protein.	Uncharacterized protein.	0.592
SOVF_056660	SOVF_114480	A0A0K9RKE5	A0A0K9R4F0	Uncharacterized protein.	Dynein light chain.	0.562
SOVF_056660	SOVF_167950	A0A0K9RKE5	A0A0K9QKT1	Uncharacterized protein.	Dynein light chain.	0.566
SOVF_056660	SOVF_195490	A0A0K9RKE5	A0A0K9QC89	Uncharacterized protein.	Dynein light chain.	0.572
SOVF_078280	SOVF_028180	A0A0K9RDR6	A0A0K9RVX5	Urease; In the C-terminal section; belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family.	Uncharacterized protein.	0.522
SOVF_083490	SOVF_028180	A0A0K9RDV8	A0A0K9RVX5	Prenylcys_lyase domain-containing protein.	Uncharacterized protein.	0.579
SOVF_083490	SOVF_168780	A0A0K9RDV8	A0A0K9QM65	Prenylcys_lyase domain-containing protein.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.426
SOVF_083490	SOVF_182640	A0A0K9RDV8	A0A0K9QG80	Prenylcys_lyase domain-containing protein.	Exocyst complex component SEC5; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.	0.475
SOVF_087310	SOVF_028180	A0A0K9RCN0	A0A0K9RVX5	Uncharacterized protein.	Uncharacterized protein.	0.522